CBIS LM Core: Image analysis

We provide free image analysis guidance to our users in software such as Fiji, R, Imaris, Huygens and others.

Imaris: cell classification
Imaris: object tracking
Huygens: PSF distillation
Huygens: Deconvolution Wizard
Fiji: STORM reconstruction

Our core facility is equipped with high-powered workstations such as the Exalit M10. CBIS researchers also have access to the CBIS in-house compute cluster (including GPU nodes) and storage. How to run Fiji on the CBIS cluster

We encourage scripting and automation for efficiency and reproducibility. Click here for some Fiji scripts that we have developed based on the needs of our users.

 

Please contact us for more information.